Loading the varoquaux2019 leaf or root dataset as SummarizedExperiment

See data(varoquaux2019leaf) or data(varoquaux2019root) for a full description of the dataset and the metadata.

load_varoquaux2019(sample_type = "leaf")

Arguments

sample_type	"leaf", "root", optional, default: leaf Sets which sample to load.

Value

a SummerizedExperiment of the leaf or root samples of Varoquaux et al.

Examples

sorghum_timecourse_data = load_varoquaux2019(sample_type="leaf")
head(sorghum_timecourse_data)
#> class: SummarizedExperiment 
#> dim: 6 197 
#> metadata(0):
#> assays(1): ''
#> rownames(6): Sobic.001G000100.v3.1 Sobic.001G000200.v3.1 ...
#>   Sobic.001G000501.v3.1 Sobic.001G000700.v3.1
#> rowData names(0):
#> colnames(197): 0622162L05 0622162L13 ... 0928169L11 0928169L19
#> colData names(22): Barcode libraryName ... Timepoint Group