.md .pdf

Contents

Datasets

Summary of the datasets used in the article

Here is a summary of all the datasets used in the article, with links to the HiC-pro format .matrix and .bed files. The files for Rao et al can be found below. Note that some of those datasets are shared in the associated github repository.

Publication	Organism	Resolution	Matrix file	Bed file
Duan et al	S. cerevisiae	10kb	matrix	bed
Feng et al	A. thaliana	40kb	matrix	bed
Sexton et al	D. melanogaster	10kb	matrix	bed
Rao et al	Human	varying	See below	See below

Rao et al, 2014

We looked at replicate 75th and 76th of the KBM7 cell-line from Rao et al, at different resolution (1mb, 500kb, 250kb, 100kb, 50kb).

1mb

Publication	Organism	Replicate	Chromosome	Resolution	Matrix file	Bed file
Rao et al	Human	75	chr01	1mb	matrix	bed
Rao et al	Human	75	chr02	1mb	matrix	bed
Rao et al	Human	75	chr03	1mb	matrix	bed
Rao et al	Human	75	chr04	1mb	matrix	bed
Rao et al	Human	75	chr05	1mb	matrix	bed
Rao et al	Human	75	chr06	1mb	matrix	bed
Rao et al	Human	75	chr07	1mb	matrix	bed
Rao et al	Human	75	chr08	1mb	matrix	bed
Rao et al	Human	75	chr09	1mb	matrix	bed
Rao et al	Human	75	chr10	1mb	matrix	bed
Rao et al	Human	75	chr11	1mb	matrix	bed
Rao et al	Human	75	chr12	1mb	matrix	bed
Rao et al	Human	75	chr13	1mb	matrix	bed
Rao et al	Human	75	chr14	1mb	matrix	bed
Rao et al	Human	75	chr15	1mb	matrix	bed
Rao et al	Human	75	chr16	1mb	matrix	bed
Rao et al	Human	75	chr17	1mb	matrix	bed
Rao et al	Human	75	chr18	1mb	matrix	bed
Rao et al	Human	75	chr19	1mb	matrix	bed
Rao et al	Human	75	chr20	1mb	matrix	bed
Rao et al	Human	75	chr21	1mb	matrix	bed
Rao et al	Human	75	chr22	1mb	matrix	bed
Rao et al	Human	76	chr01	1mb	matrix	bed
Rao et al	Human	76	chr02	1mb	matrix	bed
Rao et al	Human	76	chr03	1mb	matrix	bed
Rao et al	Human	76	chr04	1mb	matrix	bed
Rao et al	Human	76	chr05	1mb	matrix	bed
Rao et al	Human	76	chr06	1mb	matrix	bed
Rao et al	Human	76	chr07	1mb	matrix	bed
Rao et al	Human	76	chr08	1mb	matrix	bed
Rao et al	Human	76	chr09	1mb	matrix	bed
Rao et al	Human	76	chr10	1mb	matrix	bed
Rao et al	Human	76	chr11	1mb	matrix	bed
Rao et al	Human	76	chr12	1mb	matrix	bed
Rao et al	Human	76	chr13	1mb	matrix	bed
Rao et al	Human	76	chr14	1mb	matrix	bed
Rao et al	Human	76	chr15	1mb	matrix	bed
Rao et al	Human	76	chr16	1mb	matrix	bed
Rao et al	Human	76	chr17	1mb	matrix	bed
Rao et al	Human	76	chr18	1mb	matrix	bed
Rao et al	Human	76	chr19	1mb	matrix	bed
Rao et al	Human	76	chr20	1mb	matrix	bed
Rao et al	Human	76	chr21	1mb	matrix	bed
Rao et al	Human	76	chr22	1mb	matrix	bed

500kb

Publication	Organism	Replicate	Chromosome	Resolution	Matrix file	Bed file
Rao et al	Human	75	chr01	500kb	matrix	bed
Rao et al	Human	75	chr02	500kb	matrix	bed
Rao et al	Human	75	chr03	500kb	matrix	bed
Rao et al	Human	75	chr04	500kb	matrix	bed
Rao et al	Human	75	chr05	500kb	matrix	bed
Rao et al	Human	75	chr06	500kb	matrix	bed
Rao et al	Human	75	chr07	500kb	matrix	bed
Rao et al	Human	75	chr08	500kb	matrix	bed
Rao et al	Human	75	chr09	500kb	matrix	bed
Rao et al	Human	75	chr10	500kb	matrix	bed
Rao et al	Human	75	chr11	500kb	matrix	bed
Rao et al	Human	75	chr12	500kb	matrix	bed
Rao et al	Human	75	chr13	500kb	matrix	bed
Rao et al	Human	75	chr14	500kb	matrix	bed
Rao et al	Human	75	chr15	500kb	matrix	bed
Rao et al	Human	75	chr16	500kb	matrix	bed
Rao et al	Human	75	chr17	500kb	matrix	bed
Rao et al	Human	75	chr18	500kb	matrix	bed
Rao et al	Human	75	chr19	500kb	matrix	bed
Rao et al	Human	75	chr20	500kb	matrix	bed
Rao et al	Human	75	chr21	500kb	matrix	bed
Rao et al	Human	75	chr22	500kb	matrix	bed
Rao et al	Human	76	chr01	500kb	matrix	bed
Rao et al	Human	76	chr02	500kb	matrix	bed
Rao et al	Human	76	chr03	500kb	matrix	bed
Rao et al	Human	76	chr04	500kb	matrix	bed
Rao et al	Human	76	chr05	500kb	matrix	bed
Rao et al	Human	76	chr06	500kb	matrix	bed
Rao et al	Human	76	chr07	500kb	matrix	bed
Rao et al	Human	76	chr08	500kb	matrix	bed
Rao et al	Human	76	chr09	500kb	matrix	bed
Rao et al	Human	76	chr10	500kb	matrix	bed
Rao et al	Human	76	chr11	500kb	matrix	bed
Rao et al	Human	76	chr12	500kb	matrix	bed
Rao et al	Human	76	chr13	500kb	matrix	bed
Rao et al	Human	76	chr14	500kb	matrix	bed
Rao et al	Human	76	chr15	500kb	matrix	bed
Rao et al	Human	76	chr16	500kb	matrix	bed
Rao et al	Human	76	chr17	500kb	matrix	bed
Rao et al	Human	76	chr18	500kb	matrix	bed
Rao et al	Human	76	chr19	500kb	matrix	bed
Rao et al	Human	76	chr20	500kb	matrix	bed
Rao et al	Human	76	chr21	500kb	matrix	bed
Rao et al	Human	76	chr22	500kb	matrix	bed

250kb

Publication	Organism	Replicate	Chromosome	Resolution	Matrix file	Bed file
Rao et al	Human	75	chr01	250kb	matrix	bed
Rao et al	Human	75	chr02	250kb	matrix	bed
Rao et al	Human	75	chr03	250kb	matrix	bed
Rao et al	Human	75	chr04	250kb	matrix	bed
Rao et al	Human	75	chr05	250kb	matrix	bed
Rao et al	Human	75	chr06	250kb	matrix	bed
Rao et al	Human	75	chr07	250kb	matrix	bed
Rao et al	Human	75	chr08	250kb	matrix	bed
Rao et al	Human	75	chr09	250kb	matrix	bed
Rao et al	Human	75	chr10	250kb	matrix	bed
Rao et al	Human	75	chr11	250kb	matrix	bed
Rao et al	Human	75	chr12	250kb	matrix	bed
Rao et al	Human	75	chr13	250kb	matrix	bed
Rao et al	Human	75	chr14	250kb	matrix	bed
Rao et al	Human	75	chr15	250kb	matrix	bed
Rao et al	Human	75	chr16	250kb	matrix	bed
Rao et al	Human	75	chr17	250kb	matrix	bed
Rao et al	Human	75	chr18	250kb	matrix	bed
Rao et al	Human	75	chr19	250kb	matrix	bed
Rao et al	Human	75	chr20	250kb	matrix	bed
Rao et al	Human	75	chr21	250kb	matrix	bed
Rao et al	Human	75	chr22	250kb	matrix	bed
Rao et al	Human	76	chr01	250kb	matrix	bed
Rao et al	Human	76	chr02	250kb	matrix	bed
Rao et al	Human	76	chr03	250kb	matrix	bed
Rao et al	Human	76	chr04	250kb	matrix	bed
Rao et al	Human	76	chr05	250kb	matrix	bed
Rao et al	Human	76	chr06	250kb	matrix	bed
Rao et al	Human	76	chr07	250kb	matrix	bed
Rao et al	Human	76	chr08	250kb	matrix	bed
Rao et al	Human	76	chr09	250kb	matrix	bed
Rao et al	Human	76	chr10	250kb	matrix	bed
Rao et al	Human	76	chr11	250kb	matrix	bed
Rao et al	Human	76	chr12	250kb	matrix	bed
Rao et al	Human	76	chr13	250kb	matrix	bed
Rao et al	Human	76	chr14	250kb	matrix	bed
Rao et al	Human	76	chr15	250kb	matrix	bed
Rao et al	Human	76	chr16	250kb	matrix	bed
Rao et al	Human	76	chr17	250kb	matrix	bed
Rao et al	Human	76	chr18	250kb	matrix	bed
Rao et al	Human	76	chr19	250kb	matrix	bed
Rao et al	Human	76	chr20	250kb	matrix	bed
Rao et al	Human	76	chr21	250kb	matrix	bed
Rao et al	Human	76	chr22	250kb	matrix	bed

100kb

Publication	Organism	Replicate	Chromosome	Resolution	Matrix file	Bed file
Rao et al	Human	75	chr01	100kb	matrix	bed
Rao et al	Human	75	chr02	100kb	matrix	bed
Rao et al	Human	75	chr03	100kb	matrix	bed
Rao et al	Human	75	chr04	100kb	matrix	bed
Rao et al	Human	75	chr05	100kb	matrix	bed
Rao et al	Human	75	chr06	100kb	matrix	bed
Rao et al	Human	75	chr07	100kb	matrix	bed
Rao et al	Human	75	chr08	100kb	matrix	bed
Rao et al	Human	75	chr09	100kb	matrix	bed
Rao et al	Human	75	chr10	100kb	matrix	bed
Rao et al	Human	75	chr11	100kb	matrix	bed
Rao et al	Human	75	chr12	100kb	matrix	bed
Rao et al	Human	75	chr13	100kb	matrix	bed
Rao et al	Human	75	chr14	100kb	matrix	bed
Rao et al	Human	75	chr15	100kb	matrix	bed
Rao et al	Human	75	chr16	100kb	matrix	bed
Rao et al	Human	75	chr17	100kb	matrix	bed
Rao et al	Human	75	chr18	100kb	matrix	bed
Rao et al	Human	75	chr19	100kb	matrix	bed
Rao et al	Human	75	chr20	100kb	matrix	bed
Rao et al	Human	75	chr21	100kb	matrix	bed
Rao et al	Human	75	chr22	100kb	matrix	bed
Rao et al	Human	76	chr01	100kb	matrix	bed
Rao et al	Human	76	chr02	100kb	matrix	bed
Rao et al	Human	76	chr03	100kb	matrix	bed
Rao et al	Human	76	chr04	100kb	matrix	bed
Rao et al	Human	76	chr05	100kb	matrix	bed
Rao et al	Human	76	chr06	100kb	matrix	bed
Rao et al	Human	76	chr07	100kb	matrix	bed
Rao et al	Human	76	chr08	100kb	matrix	bed
Rao et al	Human	76	chr09	100kb	matrix	bed
Rao et al	Human	76	chr10	100kb	matrix	bed
Rao et al	Human	76	chr11	100kb	matrix	bed
Rao et al	Human	76	chr12	100kb	matrix	bed
Rao et al	Human	76	chr13	100kb	matrix	bed
Rao et al	Human	76	chr14	100kb	matrix	bed
Rao et al	Human	76	chr15	100kb	matrix	bed
Rao et al	Human	76	chr16	100kb	matrix	bed
Rao et al	Human	76	chr17	100kb	matrix	bed
Rao et al	Human	76	chr18	100kb	matrix	bed
Rao et al	Human	76	chr19	100kb	matrix	bed
Rao et al	Human	76	chr20	100kb	matrix	bed
Rao et al	Human	76	chr21	100kb	matrix	bed
Rao et al	Human	76	chr22	100kb	matrix	bed

50kb

Publication	Organism	Replicate	Chromosome	Resolution	Matrix file	Bed file
Rao et al	Human	75	chr01	50kb	matrix	bed
Rao et al	Human	75	chr02	50kb	matrix	bed
Rao et al	Human	75	chr03	50kb	matrix	bed
Rao et al	Human	75	chr04	50kb	matrix	bed
Rao et al	Human	75	chr05	50kb	matrix	bed
Rao et al	Human	75	chr06	50kb	matrix	bed
Rao et al	Human	75	chr07	50kb	matrix	bed
Rao et al	Human	75	chr08	50kb	matrix	bed
Rao et al	Human	75	chr09	50kb	matrix	bed
Rao et al	Human	75	chr10	50kb	matrix	bed
Rao et al	Human	75	chr11	50kb	matrix	bed
Rao et al	Human	75	chr12	50kb	matrix	bed
Rao et al	Human	75	chr13	50kb	matrix	bed
Rao et al	Human	75	chr14	50kb	matrix	bed
Rao et al	Human	75	chr15	50kb	matrix	bed
Rao et al	Human	75	chr16	50kb	matrix	bed
Rao et al	Human	75	chr17	50kb	matrix	bed
Rao et al	Human	75	chr18	50kb	matrix	bed
Rao et al	Human	75	chr19	50kb	matrix	bed
Rao et al	Human	75	chr20	50kb	matrix	bed
Rao et al	Human	75	chr21	50kb	matrix	bed
Rao et al	Human	75	chr22	50kb	matrix	bed
Rao et al	Human	76	chr01	50kb	matrix	bed
Rao et al	Human	76	chr02	50kb	matrix	bed
Rao et al	Human	76	chr03	50kb	matrix	bed
Rao et al	Human	76	chr04	50kb	matrix	bed
Rao et al	Human	76	chr05	50kb	matrix	bed
Rao et al	Human	76	chr06	50kb	matrix	bed
Rao et al	Human	76	chr07	50kb	matrix	bed
Rao et al	Human	76	chr08	50kb	matrix	bed
Rao et al	Human	76	chr09	50kb	matrix	bed
Rao et al	Human	76	chr10	50kb	matrix	bed
Rao et al	Human	76	chr11	50kb	matrix	bed
Rao et al	Human	76	chr12	50kb	matrix	bed
Rao et al	Human	76	chr13	50kb	matrix	bed
Rao et al	Human	76	chr14	50kb	matrix	bed
Rao et al	Human	76	chr15	50kb	matrix	bed
Rao et al	Human	76	chr16	50kb	matrix	bed
Rao et al	Human	76	chr17	50kb	matrix	bed
Rao et al	Human	76	chr18	50kb	matrix	bed
Rao et al	Human	76	chr19	50kb	matrix	bed
Rao et al	Human	76	chr20	50kb	matrix	bed
Rao et al	Human	76	chr21	50kb	matrix	bed
Rao et al	Human	76	chr22	50kb	matrix	bed

pastisnb Results for inference experiments