Helper methods for the Moanin class — Moanin-methods • moanin

This is a collection of helper methods for the Moanin class.

# S4 method for Moanin
group_variable_name(object)

# S4 method for Moanin
group_variable_name(object) <- value

# S4 method for Moanin
time_by_group_variable(object)

# S4 method for Moanin
group_variable(object)

# S4 method for Moanin
group_variable(object) <- value

# S4 method for Moanin
time_variable_name(object)

# S4 method for Moanin
time_variable_name(object) <- value

# S4 method for Moanin
time_variable(object)

# S4 method for Moanin
time_variable(object) <- value

# S4 method for Moanin
degrees_of_freedom(object)

# S4 method for Moanin
basis_matrix(object)

# S4 method for Moanin
spline_formula(object)

# S4 method for Moanin
show(object)

# S4 method for Moanin,ANY,character,ANY
[(x, i, j, ..., drop = TRUE)

# S4 method for Moanin,ANY,logical,ANY
[(x, i, j, ..., drop = TRUE)

# S4 method for Moanin,ANY,numeric,ANY
[(x, i, j, ..., drop = TRUE)

# S4 method for Moanin
log_transform(object)

# S4 method for Moanin
get_log_data(object)

Arguments

object	An object of class `Moanin`, an object containing all related information for time course data and the splines model that will be used (if applicable). See `create_moanin_model` for more details.
value	replacement value
x	`Moanin` object
i, j	A vector of logical or integer subscripts, indicating the rows and columns to be subsetted for `i` and `j`, respectively.
...	arguments passed to subsetting
drop	A logical scalar that is ignored.

Value

group_variable_name and time_variable_name return the name of the column containing the variable. group_variable and time_variable return the actual variable.

Details

Note that when subsetting the data, the dendrogram information and the co-clustering matrix are lost.

Examples

# Load some data
data(exampleData)
moanin = create_moanin_model(data=testData,meta=testMeta)
group_variable_name(moanin)
#> [1] "Group"
time_variable_name(moanin)
#> [1] "Timepoint"